:mod:`memote.support.sbo`
=========================

.. py:module:: memote.support.sbo

.. autoapi-nested-parse::

   Supporting functions for sbo checks performed on the model object.

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Module Contents
---------------


Functions
~~~~~~~~~

.. autoapisummary::

   memote.support.sbo.find_components_without_sbo_terms
   memote.support.sbo.check_component_for_specific_sbo_term


.. data:: LOGGER
   

   

.. function:: find_components_without_sbo_terms(model, components)

   Find model components that are not annotated with any SBO terms.


   :Parameters:

       **model** : cobra.Model
           The metabolic model under investigation.

       **components** : {"metabolites", "reactions", "genes"}
           A string denoting `cobra.Model` components.

   :Returns:

       list
           The components without any SBO term annotation.













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.. function:: check_component_for_specific_sbo_term(items, term)

   Identify model components that lack a specific SBO term(s).


   :Parameters:

       **items** : list
           A list of model components i.e. reactions to be checked for a specific
           SBO term.

       **term** : str or list of str
           A string denoting a valid SBO term matching the regex '^SBO:\d{7}$'
           or a list containing such string elements.

   :Returns:

       list
           The components without any or that specific SBO term annotation.













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