memote.experimental.config
¶
Provide a YAML parser for experiment configuration files.
Module Contents¶
Classes¶
ExperimentConfiguration |
Represent an experimental configuration. |
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class
memote.experimental.config.
ExperimentConfiguration
(filename, **kwargs)[source]¶ Bases:
object
Represent an experimental configuration.
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load
(self, model)[source]¶ Load all information from an experimental configuration file.
Parameters: - model : cobra.Model
The metabolic model under investigation.
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get_minimal_growth_rate
(self, model, threshold=0.1)[source]¶ Calculate min growth default value or return input value.
This value is used to determine if a model is capable of growth under certain experimental conditions.
Parameters: - model : cobra.Model
- threshold : float, optional
If no input is provided by the user the default value is set to a coefficient threshold times the growth under default constraints (default: 0.1).
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