memote.experimental.essentiality

Provide an interface for essentiality experiments.

Module Contents

Classes

EssentialityExperiment Represent an essentiality experiment.
class memote.experimental.essentiality.EssentialityExperiment(**kwargs)[source]

Bases: memote.experimental.experiment.Experiment

Represent an essentiality experiment.

SCHEMA = essentiality.json[source]
load(self, dtype_conversion=None)[source]

Load the data table and corresponding validation schema.

Parameters:
dtype_conversion : dict

Column names as keys and corresponding type for loading the data. Please take a look at the pandas documentation for detailed explanations.
validate(self, model, checks=None)[source]

Use a defined schema to validate the medium table format.

evaluate(self, model)[source]

Use the defined parameters to predict single gene essentiality.