Supporting functions for biomass consistency checks.
memote.support.biomass.
sum_biomass_weight
(reaction)[source]¶Compute the sum of all reaction compounds.
Parameters: | reaction : cobra.core.reaction.Reaction
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memote.support.biomass.
find_biomass_precursors
(reaction)[source]¶Return a list of all biomass precursors excluding ATP and H2O.
Parameters: | reaction : cobra.core.reaction.Reaction
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memote.support.biomass.
find_blocked_biomass_precursors
(reaction, model)[source]¶Return a list of all biomass precursors that cannot be produced.
Parameters: | reaction : cobra.core.reaction.Reaction
model : cobra.Model
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