History
Next Release
0.4.5 (2017-10-09)
- Correctly account for reversibility when testing for dead-end and orphan
metabolites.
0.4.4 (2017-09-26)
- Fix a bunch of bugs:
- Remove false positive detection of Biocyc annotation
- Allow memote to identify CTP or GTP driven transport reactions
- Refactor how memote detects GAM in the biomass reaction
- Add tests to find deadend, orphan and disconnected metabolites.
- Extend and improve algorithm to find energy-generating cycles
- Remove the
print
statement from memote.support.annotation
.generate_component_annotation_miriam_match
.
- Fix the bug in the assertion output of
memote.memote.suite.tests.test_basic
.test_gene_protein_reaction_rule_presence
.
- Split mass-charge-balance test into two separate tests for more clarity
- Fix a bug in
memote.support.consistency_helpers.get_internals
that did
not exclude the (by definition) imbalanced biomass reactions.
0.4.3 (2017-09-25)
- Fix documentation building and add auto-generation of docs.
- Make the command line output of pytest more verbose until the report is up to
speed.
- Temporarily skip
test_find_stoichiometrically_balanced_cycles
- Catch errors when testing for compartments and loops.
0.4.2 (2017-08-22)
- Push all branches with
memote online
.
0.4.1 (2017-08-22)
- Fix JSON serialization of test results.
0.4.0 (2017-08-21)
- Add a programmatic API in module
memote.suite.api
(#162).
- Reorganize the structure and build process for auto-documenting
memote
(#172).
- Add a new command
memote online
(#95, #153).
- Add more basic tests.
0.3.6 (2017-08-15)
- Improve GitHub support.
- Update the readthedocs and gitter badge.
- Add a function
memote.show_versions()
for easy dependency checking.
0.3.4 (2017-08-12)
- Properly configure Travis deployment.
0.3.2 (2017-08-12)
- Enable automatic deployment to PyPi.
0.3.0 (2017-08-12)
- Greatly extend the core test modules:
* basic
* consistency
* biomass
* annotation
* syntax
- Add an Angular-material based report with plotly.
- Add documentation on readthedocs.io.
- Make the first release on PyPi.
0.2.0 (2017-02-09)
- Yet another package structure for supporting functions, their tests, and the
model test suite.
0.1.0 (2017-01-30)
- New package structure and start of joint development