memote.support.biomass module¶

Supporting functions for biomass consistency checks.

memote.support.biomass.sum_biomass_weight(reaction)[source]¶

Compute the sum of all reaction compounds.

Parameters:	reaction : cobra.core.reaction.Reaction The biomass reaction of the model under investigation.

memote.support.biomass.find_biomass_precursors(reaction)[source]¶

Return a list of all biomass precursors excluding ATP and H2O.

Parameters:	reaction : cobra.core.reaction.Reaction The biomass reaction of the model under investigation.

memote.support.biomass.find_blocked_biomass_precursors(reaction, model)[source]¶

Return a list of all biomass precursors that cannot be produced.

Parameters:	reaction : cobra.core.reaction.Reaction The biomass reaction of the model under investigation. model : cobra.Model The metabolic model under investigation.